STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK53761.1alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase. (303 aa)    
Predicted Functional Partners:
SFK53725.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL.
 
 0.999
SFK53741.1
Putative phosphonate transport system ATP-binding protein.
 0.999
SFK53775.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI.
 
 0.999
SFK53789.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH.
 
 0.999
SFK53803.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG.
 
 0.999
SFK53671.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase.
 
 
 0.997
SFK53818.1
GntR family transcriptional regulator, phosphonate transport system regulatory protein.
 
  
 0.990
SFK53651.1
Ribose 1,5-bisphosphokinase.
 
  
 0.978
SFK69640.1
Phosphonate transport system substrate-binding protein.
 
  
 0.978
SFK69619.1
Phosphonate transport system ATP-binding protein.
 
  
 0.969
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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