STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK55086.1L-threonine aldolase. (330 aa)    
Predicted Functional Partners:
SFK70185.1
Threonine dehydratase.
   
 
 0.909
SFK12380.1
Threonine synthase.
  
 0.904
SFK12093.1
Glycine dehydrogenase subunit 2.
    
 0.902
SFK12111.1
Glycine dehydrogenase (decarboxylating) alpha subunit.
    
 0.900
SFL02636.1
Sarcosine oxidase subunit alpha.
   
 0.895
SFL02652.1
Sarcosine oxidase subunit delta.
    
  0.873
SFL02623.1
Sarcosine oxidase subunit gamma.
    
  0.860
SFK53901.1
Glycine hydroxymethyltransferase.
   
 0.829
SFK70339.1
Glycine hydroxymethyltransferase.
   
 0.829
SFK08705.1
5-aminolevulinate synthase.
     
 0.790
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.