STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK63176.1Predicted PurR-regulated permease PerM. (363 aa)    
Predicted Functional Partners:
SFK63158.1
dnaA protein.
  
 0.981
SFK11740.1
ATP synthase F0 subcomplex A subunit.
    
  0.714
SFK63140.1
Polyphosphate kinase.
       0.623
SFK63118.1
Exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase.
       0.623
SFJ95103.1
DNA replication and repair protein RecF.
  
     0.576
SFK84738.1
tRNA-U20-dihydrouridine synthase.
 
     0.462
SFK56102.1
5-(carboxyamino)imidazole ribonucleotide mutase.
    
  0.438
SFK84268.1
ATP-dependent DNA helicase RecG.
 
     0.434
SFK57092.1
Holliday junction DNA helicase subunit RuvA.
 
    0.404
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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