STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK65135.1Ribose-5-phosphate isomerase. (229 aa)    
Predicted Functional Partners:
SFK35809.1
Phosphopentomutase.
  
 
 0.974
SFK56860.1
Transketolase.
   
 0.971
SFK79725.1
Ribulose-5-phosphate 3-epimerase.
  
 0.937
SFJ95917.1
6-phosphogluconate dehydrogenase (decarboxylating).
  
 
 0.919
SFL01473.1
Ribokinase.
  
 0.915
SFK95550.1
Gluconokinase.
    
 0.905
SFK24449.1
Ribose-phosphate pyrophosphokinase.
  
 
 0.900
SFK91990.1
Phosphomannomutase / phosphoglucomutase.
 
  
 0.900
SFL12244.1
Ribose 5-phosphate isomerase B.
     
 0.893
SFK15970.1
Sugar (pentulose or hexulose) kinase.
    
 0.828
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.