STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK62616.1Long-chain acyl-CoA synthetase. (544 aa)    
Predicted Functional Partners:
SFK47604.1
Acyl transferase domain-containing protein.
 
 0.996
SFL10036.1
LSU ribosomal protein L6P.
    
  0.930
SFK71255.1
LSU ribosomal protein L13P.
    
 
 0.857
SFL09970.1
LSU ribosomal protein L15P.
    
   0.856
SFL10366.1
LSU ribosomal protein L3P.
   
   0.854
SFL10166.1
LSU ribosomal protein L24P.
    
   0.853
SFK44669.1
Cytochrome P450.
   
 0.842
SFK47393.1
Cytochrome P450.
   
 0.842
SFK61239.1
Cytochrome P450.
   
 0.842
SFL10204.1
SSU ribosomal protein S17P.
   
   0.834
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.