STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK71523.1Uncharacterized membrane protein YgdD, TMEM256/DUF423 family. (139 aa)    
Predicted Functional Partners:
SFK54331.1
Hypothetical protein.
 
  
  0.755
SFK70251.1
Hypothetical protein.
  
     0.755
SFK78005.1
Apolipoprotein A1/A4/E domain-containing protein.
 
     0.751
SFK81107.1
Hypothetical protein.
  
     0.745
SFK09454.1
Hypothetical protein.
  
     0.734
SFK54859.1
Hypothetical protein.
  
     0.732
SFK70991.1
Acetyltransferase involved in cellulose biosynthesis, CelD/BcsL family.
  
     0.723
SFK57675.1
Hypothetical protein.
 
     0.718
SFJ97974.1
Outer membrane immunogenic protein.
  
     0.717
SFJ99436.1
Hypothetical protein.
  
     0.696
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.