STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK80408.1Murein L,D-transpeptidase YafK. (247 aa)    
Predicted Functional Partners:
SFK65835.1
Flagellar FliL protein.
    
   0.543
SFK78691.1
Flagellar FliL protein.
    
   0.543
SFK81107.1
Hypothetical protein.
  
     0.518
SFK64684.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
 
  
 0.483
SFK37268.1
Opacity protein.
  
     0.457
SFK80431.1
DNA-binding transcriptional regulator, LysR family.
       0.455
SFK66556.1
L,D-transpeptidase catalytic domain.
 
  
 0.449
SFJ86397.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
 
  
 0.446
SFJ96277.1
Probable rRNA maturation factor.
   
    0.434
SFK02339.1
Cyclic nucleotide-binding domain-containing protein.
  
     0.423
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
Server load: low (14%) [HD]