STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK80950.1Haemolytic domain-containing protein. (64 aa)    
Predicted Functional Partners:
SFK34802.1
Ribonuclease P protein component.
  
  
 0.935
SFK34825.1
Protein translocase subunit yidC.
  
  
 0.914
SFK85583.1
seryl-tRNA synthetase.
  
    0.873
SFJ92725.1
Transcription termination factor Rho.
  
    0.849
SFK13357.1
16S rRNA (guanine966-N2)-methyltransferase.
  
    0.846
SFL10309.1
LSU ribosomal protein L2P.
   
    0.808
SFL10350.1
LSU ribosomal protein L4P.
   
    0.805
SFJ89672.1
Large subunit ribosomal protein L32.
   
  
 0.782
SFK57473.1
Hypothetical protein.
  
     0.761
SFJ87544.1
Protein of unknown function.
  
     0.754
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.