STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK82057.1SNF2 family N-terminal domain-containing protein. (972 aa)    
Predicted Functional Partners:
SFL08843.1
DNA polymerase-4.
  
 0.998
SFL09894.1
DNA-directed RNA polymerase subunit alpha.
  
 0.997
SFL10581.1
DNA-directed RNA polymerase subunit beta.
  
 0.997
SFJ93778.1
DNA polymerase I.
  
 0.996
SFK47604.1
Acyl transferase domain-containing protein.
  
 0.996
SFL10566.1
DNA-directed RNA polymerase subunit beta'.
   
 0.996
SFJ98528.1
ATP synthase F1 subcomplex beta subunit.
   
 0.995
SFK70070.1
DNA-directed RNA polymerase subunit omega.
  
 0.994
SFJ95081.1
DNA polymerase III, beta subunit.
  
 0.991
SFK10562.1
Acetoin utilization deacetylase AcuC.
  
 
 0.991
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.