STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK82262.1Prephenate dehydrogenase. (157 aa)    
Predicted Functional Partners:
SFK10889.1
Chorismate synthase.
 
 0.843
SFL22966.1
Prephenate dehydrogenase.
 
     0.826
SFJ88967.1
Histidinol-phosphate aminotransferase.
  
 
 0.776
SFJ99775.1
Histidinol-phosphate aminotransferase.
  
 
 0.776
SFK91734.1
Anthranilate synthase, component I /anthranilate synthase, component II.
    
 0.770
SFJ99152.1
3-phosphoshikimate 1-carboxyvinyltransferase.
  
 
 0.744
SFJ99811.1
Protein of unknown function.
 
 
 0.720
SFK37904.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
    
 0.663
SFJ92266.1
Chorismate mutase.
  
 0.659
SFJ86120.1
comF family protein.
   
  
 0.646
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.