STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK78076.1Ferredoxin, 2Fe-2S. (106 aa)    
Predicted Functional Partners:
SFK47604.1
Acyl transferase domain-containing protein.
   
 0.990
SFL00190.1
Cysteine desulfurase.
 
 0.989
SFK80933.1
NifU homolog involved in Fe-S cluster formation.
  
 0.983
SFK73073.1
NADH dehydrogenase subunit D.
  
 0.963
SFK73040.1
NADH dehydrogenase subunit B.
  
  0.962
SFK73060.1
NADH dehydrogenase subunit C.
  
 0.957
SFK73366.1
NADH dehydrogenase subunit N.
    
 0.956
SFK73174.1
NADH dehydrogenase subunit H.
  
 0.955
SFK54927.1
Glutamate synthase (NADH) small subunit.
    
 0.953
SFL00090.1
Iron-sulfur cluster assembly protein.
 
 
 0.945
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.