STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK77156.1Hypothetical protein. (91 aa)    
Predicted Functional Partners:
SFK57201.1
TolB protein.
  
 0.873
SFJ97974.1
Outer membrane immunogenic protein.
   
 0.724
SFK13395.1
Porin subfamily protein.
   
 0.724
SFK23946.1
Outer membrane immunogenic protein.
   
 0.724
SFK36914.1
Opacity protein.
   
 0.724
SFK37268.1
Opacity protein.
   
 0.724
SFK56520.1
Outer membrane autotransporter barrel domain-containing protein.
   
 0.724
SFK57357.1
Opacity protein.
   
 0.724
SFK69695.1
Porin subfamily protein.
   
 0.724
SFK69711.1
Porin subfamily protein.
   
 0.724
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.