STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK86060.12-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase). (282 aa)    
Predicted Functional Partners:
SFK54767.1
Arabinose-5-phosphate isomerase.
 
 
 0.988
SFK20901.1
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase).
 
  
 0.937
SFJ96679.1
Prephenate dehydratase.
 
 
  
 0.902
SFK12850.1
lipid-A-disaccharide kinase.
 
   
 0.851
SFK12865.1
3-deoxy-D-manno-octulosonic-acid transferase.
 
   
 0.850
SFK73776.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
  
 0.848
SFK73857.1
lipid-A-disaccharide synthase.
 
   
 0.847
SFK21436.1
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase.
 
  
 0.846
SFK73824.1
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase.
 
   
 0.845
SFK86249.1
KDO2-lipid IV(A) lauroyltransferase.
 
  
 0.762
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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