STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK85766.1Single-strand binding protein. (185 aa)    
Predicted Functional Partners:
SFJ97784.1
DNA polymerase-3 subunit gamma/tau.
   
 0.987
SFK63636.1
DNA polymerase III, chi subunit.
    
 0.984
SFK73531.1
DNA polymerase-3 subunit alpha.
 
 
 0.979
SFJ98464.1
Replication restart DNA helicase PriA.
   
 0.978
SFK94202.1
Error-prone DNA polymerase, DnaE-like.
   
 0.976
SFK12235.1
Ribonuclease HI.
   
 
 0.940
SFL10309.1
LSU ribosomal protein L2P.
  
 
  0.933
SFL10387.1
SSU ribosomal protein S10P.
  
 
 0.928
SFL08650.1
DNA topoisomerase-1.
  
 
 0.915
SFK63931.1
Small subunit ribosomal protein S6.
  
  
 0.912
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.