STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK89672.1Membrane dipeptidase. (355 aa)    
Predicted Functional Partners:
SFK66354.1
(2R)-3-sulfolactate dehydrogenase (NADP+).
  
    0.826
SFL04324.1
Putative glutamine amidotransferase.
      0.721
SFK26497.1
Peptide/nickel transport system substrate-binding protein.
 
     0.673
SFK89659.1
Threonine/homoserine/homoserine lactone efflux protein.
       0.639
SFK26481.1
Peptide/nickel transport system permease protein.
 
     0.543
SFK89690.1
Mannose-6-phosphate isomerase, cupin superfamily.
       0.496
SFK26465.1
Peptide/nickel transport system permease protein.
 
     0.454
SFK26424.1
Peptide/nickel transport system ATP-binding protein.
 
     0.429
SFK70774.1
Hydroxylysine kinase /5-phosphonooxy-L-lysine phospho-lyase apoenzyme.
 
    0.421
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.