STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK89981.1Voltage-gated potassium channel. (252 aa)    
Predicted Functional Partners:
SFK80490.1
Trk system potassium uptake protein TrkH.
  
 
 0.935
SFK80512.1
Trk system potassium uptake protein TrkH.
  
 
 0.935
SFK24120.1
Molybdopterin synthase subunit MoaE.
   
    0.808
SFK02250.1
Voltage-gated potassium channel.
  
     0.756
SFK53266.1
uroporphyrinogen-III synthase.
  
    0.745
SFJ90981.1
16S rRNA (cytosine967-C5)-methyltransferase.
  
    0.626
SFK64333.1
16S rRNA (cytosine967-C5)-methyltransferase.
  
    0.626
SFK65029.1
NAD+ synthase.
  
 
  0.597
SFK12709.1
Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1).
 
   
 0.508
SFK12734.1
Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1).
 
   
 0.508
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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