STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK95516.1D-lactate dehydrogenase. (561 aa)    
Predicted Functional Partners:
SFK53355.1
L-lactate dehydrogenase (cytochrome).
 
 0.959
SFJ89089.1
Hydroxyacylglutathione hydrolase.
     
 0.930
SFK84424.1
Pyruvate dehydrogenase E1 component beta subunit.
    
 0.887
SFK84405.1
Pyruvate dehydrogenase E1 component alpha subunit.
    
 0.884
SFK55438.1
Pyruvate kinase.
    
 0.876
SFK80309.1
Pyruvate phosphate dikinase.
    
 0.871
SFK23813.1
Glyoxylase, beta-lactamase superfamily II.
  
  
  0.848
SFK42037.1
Pyruvate dehydrogenase E1 component.
     
 0.845
SFK95499.1
TRAP transporter, DctM subunit.
 
     0.822
SFJ93138.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.821
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.