STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK93625.1acyl-CoA dehydrogenase. (419 aa)    
Predicted Functional Partners:
SFK93557.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
 0.987
SFL11819.1
Short chain enoyl-CoA hydratase.
 
 0.942
SFK42532.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
 
 0.927
SFK09395.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 0.925
SFJ91874.1
Electron transfer flavoprotein alpha subunit apoprotein.
 0.915
SFK47604.1
Acyl transferase domain-containing protein.
  
 0.914
SFJ91856.1
Electron transfer flavoprotein beta subunit.
  
 
 0.859
SFK93657.1
acyl-CoA dehydrogenase.
 
     0.859
SFJ89603.1
acetyl-CoA acetyltransferase.
  
  0.855
SFK09378.1
acetyl-CoA C-acetyltransferase.
  
  0.855
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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