STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK95167.1Putative ABC transport system ATP-binding protein. (238 aa)    
Predicted Functional Partners:
SFK26713.1
Putative ABC transport system permease protein.
  
 0.999
SFK95156.1
Putative ABC transport system permease protein.
 
 0.997
SFK73486.1
Lipoprotein-releasing system permease protein.
 
 0.970
SFK95140.1
HlyD family secretion protein.
 
 
 0.939
SFJ91103.1
Outer membrane lipoprotein-sorting protein.
   
 
 0.937
SFK94507.1
Oligopeptide transport system ATP-binding protein.
 
  
 
0.891
SFK26732.1
HlyD family secretion protein.
 
 0.882
SFL14324.1
ABC-2 type transport system permease protein.
   
 0.858
SFL16425.1
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.
 
  
 
0.856
SFK26443.1
Peptide/nickel transport system ATP-binding protein.
 
  
 
0.843
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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