STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL02728.1Urea transport system substrate-binding protein. (49 aa)    
Predicted Functional Partners:
SFL02747.1
Substrate-binding protein domain-containing protein.
       0.768
SFK02422.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family.
  
 
  0.502
SFK33678.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family.
  
 
  0.502
SFK34387.1
Branched-chain amino acid transport system permease protein.
  
 
  0.502
SFK54551.1
Branched-chain amino acid transport system permease protein.
  
 
  0.502
SFK79943.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-).
  
 
  0.502
SFK87020.1
Branched-chain amino acid transport system permease protein.
  
 
  0.502
SFL14992.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-).
  
 
  0.502
SFL21205.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-).
  
 
  0.502
SFL02708.1
Hypothetical protein.
       0.447
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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