STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL04795.1iron(III) transport system ATP-binding protein. (353 aa)    
Predicted Functional Partners:
SFL04775.1
iron(III) transport system permease protein.
 
 
 0.982
SFL04754.1
iron(III) transport system substrate-binding protein.
 
 
 0.955
SFK48284.1
Putative spermidine/putrescine transport system permease protein.
 
 
 0.950
SFK48266.1
Putative spermidine/putrescine transport system permease protein.
 
 0.944
SFK25550.1
ABC-type spermidine/putrescine transport system, permease component II.
 
 
 0.934
SFK95259.1
iron(III) transport system permease protein.
 
 0.924
SFK32957.1
Putrescine transport system permease protein.
 0.917
SFL14666.1
Putrescine transport system permease protein.
 0.917
SFK32935.1
Putrescine transport system permease protein.
 
 0.907
SFK10214.1
Spermidine/putrescine transport system permease protein.
 
 0.902
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.