STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL05393.1Cytochrome C oxidase, cbb3-type, subunit III. (533 aa)    
Predicted Functional Partners:
SFK16332.1
Sulfur dehydrogenase subunit SoxD.
   
 0.992
SFK24679.1
Ubiquinol-cytochrome c reductase cytochrome b subunit.
  
 0.992
SFL05443.1
Transcriptional regulator, AsnC family.
 
  
 0.989
SFL05458.1
Transcriptional regulator, AsnC family.
 
  
 0.989
SFL05427.1
Transcriptional regulator, AsnC family.
 
  
 0.988
SFL05474.1
Protein NirF.
 
0.987
SFK08849.1
Cytochrome c oxidase cbb3-type subunit 1.
  
 0.986
SFL05409.1
Heme d1 biosynthesis radical SAM protein NirJ.
  
 0.985
SFL05490.1
Cytochrome c55X.
 
  
 0.985
SFK08832.1
Cytochrome c oxidase cbb3-type subunit 2.
  
 0.968
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.