STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL04132.1Glutaconate CoA-transferase subunit B. (263 aa)    
Predicted Functional Partners:
SFL04144.1
Glutaconate CoA-transferase subunit A.
 0.999
SFK32917.1
3-oxoacid CoA-transferase subunit A.
  
 0.993
SFL04181.1
3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase.
 
 
 0.958
SFL04168.1
Protocatechuate 3,4-dioxygenase beta subunit.
 
 
 0.929
SFL04154.1
Protocatechuate 3,4-dioxygenase alpha subunit.
 
 
 0.928
SFL04048.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
  
 0.903
SFL04122.1
acetyl-CoA acyltransferase.
 
 
 0.883
SFK62529.1
Amidase.
    
  0.759
SFK09395.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 0.739
SFK42532.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 0.739
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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