STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL05628.1DNA-binding transcriptional regulator, LysR family. (281 aa)    
Predicted Functional Partners:
SFK31056.1
Transcriptional regulator, LysR family.
  
     0.773
SFK07772.1
DNA-binding transcriptional regulator, LysR family.
  
     0.771
SFK38395.1
DNA-binding transcriptional regulator, LysR family.
  
     0.769
SFK94897.1
DNA-binding transcriptional regulator, LysR family.
  
     0.766
SFL04374.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator.
  
     0.766
SFJ94786.1
Transcriptional regulator, LysR family.
  
     0.762
SFK34926.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator.
  
     0.759
SFK86357.1
DNA-binding transcriptional regulator, LysR family.
  
     0.759
SFL18824.1
DNA-binding transcriptional regulator, LysR family.
  
     0.758
SFL02451.1
DNA-binding transcriptional regulator, LysR family.
  
     0.749
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.