STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL07935.1Thiol-disulfide isomerase or thioredoxin. (180 aa)    
Predicted Functional Partners:
SFK13833.1
Peptide-methionine (S)-S-oxide reductase.
 
 
 0.969
SFK37855.1
Peptide-methionine (S)-S-oxide reductase.
   
 0.965
SFK91633.1
1-Cys peroxiredoxin.
 
 0.946
SFL05357.1
1-Cys peroxiredoxin.
 
 0.945
SFK10670.1
Protein SCO1/2.
 
 
 0.943
SFK12445.1
Peroxiredoxin.
   
 0.936
SFJ89749.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
 0.935
SFK12591.1
Cytochrome c oxidase subunit 2.
    
 
 0.925
SFL10581.1
DNA-directed RNA polymerase subunit beta.
    
 0.903
SFJ98285.1
Dihydrolipoamide dehydrogenase.
   
 0.902
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.