STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL12600.1Na+-transporting NADH:ubiquinone oxidoreductase subunit E. (202 aa)    
Predicted Functional Partners:
SFL12554.1
Na+-transporting NADH:ubiquinone oxidoreductase subunit C.
 
 
 0.999
SFL12576.1
Na+-transporting NADH:ubiquinone oxidoreductase subunit D.
 
 
 0.999
SFL12621.1
Na+-transporting NADH:ubiquinone oxidoreductase subunit F.
 
 
 0.999
SFL12510.1
Na+-transporting NADH:ubiquinone oxidoreductase subunit A.
 
 
 0.998
SFL12529.1
Na+-transporting NADH:ubiquinone oxidoreductase subunit B.
 
 
 0.998
SFL12491.1
Thiamine biosynthesis lipoprotein.
 
  
 0.867
SFL12471.1
Hypothetical protein.
 
   
 0.659
SFL12635.1
Hypothetical protein.
       0.481
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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