STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL11520.1AraC-type DNA-binding protein. (286 aa)    
Predicted Functional Partners:
SFK13214.1
AraC-type DNA-binding protein.
 
 0.884
SFL11508.1
Phytanoyl-CoA dioxygenase (PhyH).
 
  
  0.841
SFK62467.1
AraC-type DNA-binding protein.
  
   0.757
SFK97711.1
AraC-type DNA-binding protein.
  
   0.703
SFK54951.1
Glutamate synthase (NADH) large subunit.
    
  0.665
SFK21047.1
AraC-type DNA-binding protein.
  
   0.659
SFK23009.1
RNA polymerase, sigma 70 subunit, RpoD.
    
 
 0.644
SFK57556.1
RNA polymerase, sigma 32 subunit, RpoH.
    
 
 0.644
SFK53417.1
RNA polymerase, sigma 32 subunit, RpoH.
    
 
 0.644
SFL04181.1
3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase.
    
 0.613
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
Server load: low (16%) [HD]