STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL15377.1Type III secretion protein J. (267 aa)    
Predicted Functional Partners:
SFL15148.1
Type III secretion protein T.
 
 
 0.998
SFL15170.1
Type III secretion protein S.
 
 
 0.998
SFL15191.1
Type III secretion protein R.
 
 
 0.998
SFL15348.1
Type III secretion protein L.
 
  
 0.994
SFL15070.1
Type III secretion protein V.
 
 
 0.990
SFL15477.1
General secretion pathway protein D.
 
 0.990
SFL15334.1
Type III secretion system ATPase, FliI/YscN.
 
  
 0.978
SFL15129.1
Type III secretion protein U.
 
  
 0.977
SFL15406.1
Hypothetical protein.
  
  
 0.940
SFL15206.1
Type III secretion protein Q.
  
  
 0.919
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.