STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL17605.1NAD dependent epimerase/dehydratase family protein. (236 aa)    
Predicted Functional Partners:
SFL10128.1
SSU ribosomal protein S14P.
   
  0.944
SFL10292.1
SSU ribosomal protein S19P.
   
  0.942
SFL10479.1
SSU ribosomal protein S12P.
   
 0.941
SFL10204.1
SSU ribosomal protein S17P.
   
  0.938
SFL09921.1
SSU ribosomal protein S13P.
   
  0.936
SFL10001.1
Small subunit ribosomal protein S5.
   
  0.936
SFL10387.1
SSU ribosomal protein S10P.
   
  0.936
SFL10112.1
Small subunit ribosomal protein S8.
   
  0.935
SFL10262.1
Small subunit ribosomal protein S3.
   
  0.935
SFJ96491.1
Small subunit ribosomal protein S15.
   
  0.934
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.