STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL19564.1Hypothetical protein. (115 aa)    
Predicted Functional Partners:
SFK37808.1
Site-specific recombinase XerD.
    
  0.650
SFK81986.1
Site-specific recombinase XerD.
    
  0.650
SFK97565.1
Protein of unknown function.
    
  0.650
SFL14187.1
Phage integrase family protein.
    
  0.650
SFL14239.1
Hypothetical protein.
    
  0.650
SFL22903.1
Phage integrase family protein.
    
  0.650
SFL22918.1
Protein of unknown function.
    
  0.650
SFL24311.1
Site-specific recombinase XerD.
    
  0.650
SFL24793.1
Phage integrase family protein.
    
  0.650
SFL25818.1
Hypothetical protein.
    
  0.650
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.