STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL19528.1Capsule polysaccharide biosynthesis protein. (378 aa)    
Predicted Functional Partners:
SFK47514.1
Capsular polysaccharide transport system permease protein.
 
  
 0.971
SFK47499.1
Capsular polysaccharide transport system ATP-binding protein.
 
  
 0.969
SFK47531.1
Capsular polysaccharide transport system permease protein.
 
  
 0.969
SFK42715.1
Polysaccharide export outer membrane protein.
 
  
 0.926
SFK47548.1
Polysaccharide export outer membrane protein.
 
  
 0.924
SFK47481.1
Capsular polysaccharide export protein.
   
 0.869
SFK47463.1
Capsular polysaccharide export protein.
   
 0.834
SFK47604.1
Acyl transferase domain-containing protein.
 
     0.752
SFK70955.1
Polysaccharide export outer membrane protein.
  
  
 0.704
SFL02243.1
Polysaccharide export outer membrane protein.
  
  
 0.704
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.