STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL20868.1RNA polymerase sigma-70 factor, ECF subfamily. (181 aa)    
Predicted Functional Partners:
SFL20901.1
FecR family protein.
 
 0.970
SFL10566.1
DNA-directed RNA polymerase subunit beta'.
    
 0.946
SFL10581.1
DNA-directed RNA polymerase subunit beta.
    
 0.939
SFK70070.1
DNA-directed RNA polymerase subunit omega.
    
 0.909
SFL09894.1
DNA-directed RNA polymerase subunit alpha.
    
 0.909
SFK25767.1
anti-ECFsigma factor, ChrR.
  
 
 0.889
SFK97768.1
Transmembrane transcriptional regulator (anti-sigma factor RsiW).
  
 
 0.881
SFL20746.1
FecR family protein.
 
 0.872
SFK57893.1
Chemotaxis protein methyltransferase CheR.
    
   0.815
SFL20881.1
Hypothetical protein.
       0.773
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.