STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL23496.1Type II secretory pathway, component ExeA (predicted ATPase). (210 aa)    
Predicted Functional Partners:
SFL23479.1
Hypothetical protein.
      0.973
SFL23509.1
Integrase core domain-containing protein.
 
     0.869
SFL23576.1
Filamentous hemagglutinin.
 
     0.648
SFL23522.1
Helix-turn-helix domain of resolvase.
 
     0.608
SFL23535.1
Resolvase, N terminal domain.
 
     0.561
SFK65962.1
Flagellar basal-body rod protein FlgC.
    
   0.543
SFK78855.1
Flagellar basal-body rod protein FlgC.
    
   0.543
SFK20529.1
MFS transporter, SET family, sugar efflux transporter.
  
     0.516
SFK20543.1
MFS transporter, SET family, sugar efflux transporter.
  
     0.504
SFL18579.1
Integrase core domain-containing protein.
 
   
 0.489
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.