STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL25360.1methionyl-tRNA formyltransferase. (214 aa)    
Predicted Functional Partners:
SFL25476.1
UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase.
     0.934
SFK70429.1
NusB antitermination factor.
  
  
 0.860
SFK32337.1
Methylenetetrahydrofolate dehydrogenase (NADP+).
 
 
 0.858
SFJ90981.1
16S rRNA (cytosine967-C5)-methyltransferase.
  
 
 0.846
SFK64333.1
16S rRNA (cytosine967-C5)-methyltransferase.
  
 
 0.846
SFL25436.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase.
 
 
 0.830
SFK22277.1
Methionine synthase (B12-dependent).
    
 0.816
SFJ98464.1
Replication restart DNA helicase PriA.
  
    0.762
SFL25395.1
N-acetylneuraminate synthase.
 
     0.706
SFL25377.1
Capsule polysaccharide biosynthesis protein.
 
     0.699
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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