node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFE66197.1 | rplA | SAMN04488035_0076 | SAMN04488035_0389 | Cold-shock DNA-binding protein family. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.620 |
SFE66197.1 | rplO | SAMN04488035_0076 | SAMN04488035_0434 | Cold-shock DNA-binding protein family. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.674 |
SFE66197.1 | rplV | SAMN04488035_0076 | SAMN04488035_0420 | Cold-shock DNA-binding protein family. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.593 |
SFE66197.1 | rpmE | SAMN04488035_0076 | SAMN04488035_2401 | Cold-shock DNA-binding protein family. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.666 |
SFE66197.1 | rpmJ | SAMN04488035_0076 | SAMN04488035_0440 | Cold-shock DNA-binding protein family. | LSU ribosomal protein L36P; Manually curated; Belongs to the bacterial ribosomal protein bL36 family. | 0.668 |
SFE66197.1 | rpsB | SAMN04488035_0076 | SAMN04488035_0878 | Cold-shock DNA-binding protein family. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.610 |
SFE66197.1 | rpsL | SAMN04488035_0076 | SAMN04488035_0410 | Cold-shock DNA-binding protein family. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.675 |
SFE66197.1 | rpsO | SAMN04488035_0076 | SAMN04488035_0901 | Cold-shock DNA-binding protein family. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.622 |
SFE66197.1 | rpsP | SAMN04488035_0076 | SAMN04488035_0864 | Cold-shock DNA-binding protein family. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.575 |
SFE66197.1 | tuf | SAMN04488035_0076 | SAMN04488035_0413 | Cold-shock DNA-binding protein family. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.730 |
rplA | SFE66197.1 | SAMN04488035_0389 | SAMN04488035_0076 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Cold-shock DNA-binding protein family. | 0.620 |
rplA | rplO | SAMN04488035_0389 | SAMN04488035_0434 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplA | rplV | SAMN04488035_0389 | SAMN04488035_0420 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
rplA | rpmE | SAMN04488035_0389 | SAMN04488035_2401 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.998 |
rplA | rpmJ | SAMN04488035_0389 | SAMN04488035_0440 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L36P; Manually curated; Belongs to the bacterial ribosomal protein bL36 family. | 0.998 |
rplA | rpsB | SAMN04488035_0389 | SAMN04488035_0878 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplA | rpsL | SAMN04488035_0389 | SAMN04488035_0410 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
rplA | rpsO | SAMN04488035_0389 | SAMN04488035_0901 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rplA | rpsP | SAMN04488035_0389 | SAMN04488035_0864 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
rplA | tuf | SAMN04488035_0389 | SAMN04488035_0413 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.999 |