STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE80260.1VTC domain-containing protein. (277 aa)    
Predicted Functional Partners:
SFE80290.1
Protein of unknown function.
 
     0.962
SFE80230.1
Protein of unknown function.
 
     0.961
SFE80204.1
FAD/FMN-containing dehydrogenase.
       0.556
SFE80336.1
Two-component system, OmpR family, sensor kinase.
       0.523
SFE80318.1
Two-component system, OmpR family, response regulator.
       0.518
SFE80143.1
Threonine dehydrogenase.
       0.447
SFE80173.1
Hypothetical protein.
       0.447
SFE80376.1
Methyl-accepting chemotaxis sensory transducer with GAF sensor.
 
     0.432
SFE68391.1
Anti-sigma-K factor rskA.
  
     0.407
SFE64953.1
DNA-3-methyladenine glycosylase II.
       0.405
Your Current Organism:
Sanguibacter marinus
NCBI taxonomy Id: 285351
Other names: CGMCC 1.3457, DSM 19083, JCM 12547, S. marinus, Sanguibacter marinus Huang et al. 2005 emend. Pikuta et al. 2017, Sanguibacter sp. 1-19, strain 1-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.