STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE98392.1Biotin transport system ATP-binding protein. (229 aa)    
Predicted Functional Partners:
SFE98372.1
Biotin transport system permease protein.
 
 0.999
SFE98409.1
Biotin transport system substrate-specific component.
 
 
 0.999
SFF04251.1
Energy-coupling factor transport system permease protein.
  
 0.987
SFE81881.1
uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
    
 0.677
SFF23805.1
uroporphyrinogen-III C-methyltransferase.
    
 0.677
SFF36148.1
uroporphyrinogen-III C-methyltransferase.
    
 0.677
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.630
SFE98425.1
ATPase components of ABC transporters with duplicated ATPase domains.
    
 
0.603
SFE98347.1
Hypothetical protein.
       0.583
SFF20311.1
ABC transporter.
 
0.554
Your Current Organism:
Sanguibacter marinus
NCBI taxonomy Id: 285351
Other names: CGMCC 1.3457, DSM 19083, JCM 12547, S. marinus, Sanguibacter marinus Huang et al. 2005 emend. Pikuta et al. 2017, Sanguibacter sp. 1-19, strain 1-19
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