STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF01966.1Phytoene/squalene synthetase. (291 aa)    
Predicted Functional Partners:
SFF01937.1
Phytoene desaturase.
 
 0.999
SFF01991.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
 
 0.993
SFF01888.1
Lycopene cyclase domain-containing protein.
 
 
 0.984
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
 0.984
SFF01856.1
4-hydroxybenzoate polyprenyltransferase.
 
 
 0.979
SFF01911.1
Lycopene cyclase domain-containing protein.
 
   
 0.976
SFE72509.1
Heptaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.967
SFE72106.1
Geranylgeranyl reductase family.
  
 
 0.959
SFF29947.1
Acetaldehyde dehydrogenase / alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.942
SFF07259.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
  
 0.920
Your Current Organism:
Sanguibacter marinus
NCBI taxonomy Id: 285351
Other names: CGMCC 1.3457, DSM 19083, JCM 12547, S. marinus, Sanguibacter marinus Huang et al. 2005 emend. Pikuta et al. 2017, Sanguibacter sp. 1-19, strain 1-19
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