STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF09192.1Alpha-amylase. (496 aa)    
Predicted Functional Partners:
SFF30693.1
Maltokinase.
  
 0.805
SFF02201.1
Starch phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
 
 0.777
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 
  0.773
SFF06182.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
 
 
 
  0.763
SFE85255.1
4-alpha-glucanotransferase.
  
 
 0.728
SFF06204.1
Maltooligosyl trehalose synthase.
  
 
 0.727
SFF30760.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
 
 
 
  0.686
SFF24149.1
Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
    
 0.680
SFF09173.1
Alpha-glucosidase.
 
  
  0.641
SFE78887.1
Alpha-1,6-glucosidases, pullulanase-type; Belongs to the glycosyl hydrolase 13 family.
 
 
0.628
Your Current Organism:
Sanguibacter marinus
NCBI taxonomy Id: 285351
Other names: CGMCC 1.3457, DSM 19083, JCM 12547, S. marinus, Sanguibacter marinus Huang et al. 2005 emend. Pikuta et al. 2017, Sanguibacter sp. 1-19, strain 1-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.