STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF17577.1Pectate lyase superfamily protein. (629 aa)    
Predicted Functional Partners:
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
   0.601
SFF12721.1
Endo-1,4-beta-xylanase.
 
  
 0.536
SFF17595.1
Hypothetical protein.
       0.530
SFF17613.1
Hypothetical protein.
       0.530
SFF35691.1
Hexosaminidase.
  
  
 0.470
SFF17630.1
Uncharacterized OsmC-related protein.
       0.437
SFF17649.1
Hypothetical protein.
       0.437
SFF17669.1
N-Dimethylarginine dimethylaminohydrolase.
       0.437
SFF17688.1
Hypothetical protein.
       0.429
SFF10711.1
Beta-glucosidase.
  
  
 0.421
Your Current Organism:
Sanguibacter marinus
NCBI taxonomy Id: 285351
Other names: CGMCC 1.3457, DSM 19083, JCM 12547, S. marinus, Sanguibacter marinus Huang et al. 2005 emend. Pikuta et al. 2017, Sanguibacter sp. 1-19, strain 1-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.