STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF28680.1Two-component system, OmpR family, sensor histidine kinase KdpD. (465 aa)    
Predicted Functional Partners:
SFF28669.1
Two-component system, OmpR family, KDP operon response regulator KdpE.
 0.991
SFE89170.1
HAMP domain-containing protein.
  
0.953
SFF02637.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.931
SFF33718.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.873
SFE80055.1
Response regulator receiver domain-containing protein.
 
 0.871
SFF29907.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.857
SFF20738.1
Two component transcriptional regulator, winged helix family.
 0.856
SFF29394.1
Two-component system, OmpR family, response regulator MtrA.
 0.840
SFE80318.1
Two-component system, OmpR family, response regulator.
 0.836
SFF28325.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.827
Your Current Organism:
Sanguibacter marinus
NCBI taxonomy Id: 285351
Other names: CGMCC 1.3457, DSM 19083, JCM 12547, S. marinus, Sanguibacter marinus Huang et al. 2005 emend. Pikuta et al. 2017, Sanguibacter sp. 1-19, strain 1-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.