STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF28788.1TIGR03089 family protein. (266 aa)    
Predicted Functional Partners:
SFF06479.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.963
SFF29947.1
Acetaldehyde dehydrogenase / alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.904
SFE77715.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.894
SFF22669.1
L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.876
SFF07053.1
Acyl-CoA synthetase (NDP forming).
 
  
 0.868
SFE82062.1
Citrate synthase; Belongs to the citrate synthase family.
 
 0.841
SFF29839.1
2-oxoglutarate dehydrogenase E1 component.
  
 
 0.747
SFE77562.1
Malate synthase; Belongs to the malate synthase family.
   
 0.706
SFF30836.1
Hypothetical protein.
  
    0.659
SFF00185.1
Glutamate synthase (NADH) large subunit.
   
 
 0.623
Your Current Organism:
Sanguibacter marinus
NCBI taxonomy Id: 285351
Other names: CGMCC 1.3457, DSM 19083, JCM 12547, S. marinus, Sanguibacter marinus Huang et al. 2005 emend. Pikuta et al. 2017, Sanguibacter sp. 1-19, strain 1-19
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