STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF28837.1Hypothetical protein. (545 aa)    
Predicted Functional Partners:
SFF28821.1
Glycosyltransferase, GT2 family.
 
    0.962
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.773
SFF30620.1
Hypothetical protein.
  
     0.711
SFF17057.1
Hypothetical protein.
  
     0.701
SFF02637.1
Serine phosphatase RsbU, regulator of sigma subunit.
     
 0.653
SFF09742.1
Competence protein.
  
   
 0.592
SFE90104.1
SseB protein N-terminal domain-containing protein.
  
     0.581
SFF29428.1
Sporulation and spore germination.
  
     0.561
SFE87739.1
DivIVA domain-containing protein.
  
     0.553
SFF22569.1
Type II secretion system (T2SS), protein F.
  
     0.545
Your Current Organism:
Sanguibacter marinus
NCBI taxonomy Id: 285351
Other names: CGMCC 1.3457, DSM 19083, JCM 12547, S. marinus, Sanguibacter marinus Huang et al. 2005 emend. Pikuta et al. 2017, Sanguibacter sp. 1-19, strain 1-19
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