STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liaS_4Sensor histidine kinase LiaS. (371 aa)    
Predicted Functional Partners:
degU_5
Transcriptional regulatory protein DegU.
 
 
 0.911
nreC_3
Oxygen regulatory protein NreC.
 
 
 0.840
nreC_4
Oxygen regulatory protein NreC.
 
 
 0.814
liaS_6
Sensor histidine kinase LiaS.
  
     0.725
desK_5
Sensor histidine kinase DesK.
  
     0.717
liaS_3
Sensor histidine kinase LiaS.
  
     0.690
liaS_5
Sensor histidine kinase LiaS.
  
     0.667
desK_4
Sensor histidine kinase DesK.
  
     0.651
liaS_1
Sensor histidine kinase LiaS.
  
     0.644
liaR_8
Transcriptional regulatory protein LiaR.
 
 
 0.637
Your Current Organism:
Streptomyces rubrolavendulae
NCBI taxonomy Id: 285473
Other names: S. rubrolavendulae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.