STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tycC_1Tyrocidine synthase 3. (614 aa)    
Predicted Functional Partners:
lgrB_1
Linear gramicidin synthase subunit B.
   0.995
lgrB_2
Linear gramicidin synthase subunit B.
 
 0.988
tycC_3
Tyrocidine synthase 3.
 
0.966
lgrD_4
Linear gramicidin synthase subunit D.
 
 0.963
srfAA_1
Surfactin synthase subunit 1; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
0.937
srfAB_2
Surfactin synthase subunit 2.
  
 0.928
pksJ
Polyketide synthase PksJ.
 
0.923
AOT61583.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 0.917
lgrE_1
Linear gramicidin dehydrogenase LgrE.
 
  
 0.873
AOT61489.1
MbtH-like protein.
 
    0.865
Your Current Organism:
Streptomyces rubrolavendulae
NCBI taxonomy Id: 285473
Other names: S. rubrolavendulae
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