STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCE65267.1Beta protein. (356 aa)    
Predicted Functional Partners:
SCE93857.1
ABC-2 type transport system permease protein.
  
     0.694
SCF27473.1
Hypothetical protein; Manually curated.
  
     0.596
SCF32543.1
S-formylglutathione hydrolase FrmB.
  
     0.587
SCE65260.1
Sulfotransferase domain-containing protein.
       0.572
SCF28541.1
HEAT repeat-containing protein.
  
     0.524
SCE94843.1
Sporadically distributed protein, TIGR04141 family.
  
     0.497
SCF43538.1
L,D-transpeptidase catalytic domain.
  
     0.457
SCF40378.1
SEC-C motif-containing protein.
  
     0.455
SCE91002.1
Uncaracterized surface protein containing fasciclin (FAS1) repeats.
  
     0.449
SCF28552.1
TrkA-N domain-containing protein.
  
     0.421
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.