STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCE66121.1Helix-turn-helix domain-containing protein. (185 aa)    
Predicted Functional Partners:
SCE66107.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
    0.971
SCE66132.1
Cyclopropane-fatty-acyl-phospholipid synthase.
       0.540
SCE66143.1
FAD/FMN-containing dehydrogenase.
       0.534
SCF09633.1
ABC-2 family transporter protein.
  
     0.519
SCE97952.1
Chitobiase/beta-hexosaminidase C-terminal domain-containing protein.
  
     0.465
SCE97309.1
Enterochelin esterase.
  
     0.452
SCE75412.1
Zinc carboxypeptidase.
  
     0.436
SCE67631.1
Putative zinc-finger.
  
     0.424
SCE67659.1
Hypothetical protein.
  
     0.418
SCF06869.1
Glycerophosphoryl diester phosphodiesterase.
  
     0.408
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.