STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCE67278.1Spermidine/putrescine transport system substrate-binding protein. (394 aa)    
Predicted Functional Partners:
SCE67235.1
Spermidine/putrescine transport system permease protein.
 
 0.999
SCE67246.1
Spermidine/putrescine transport system permease protein.
 
 
 0.999
SCE67262.1
Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.998
SCF37506.1
Putative spermidine/putrescine transport system permease protein.
 
 
 0.962
SCF37513.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 
 0.960
SCE90578.1
Molybdate transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.950
SCE67223.1
Glycine/D-amino acid oxidase (deaminating).
 
   
 0.926
SCE67288.1
Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA.
 
     0.797
SCE67208.1
Saccharopine dehydrogenase, NADP-dependent.
       0.745
SCE67330.1
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.645
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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