STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCE69220.1Ribosomal protein S18 acetylase RimI. (319 aa)    
Predicted Functional Partners:
SCE69235.1
Hypothetical protein.
 
     0.715
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
  0.598
SCE66969.1
PPE-repeat protein.
  
     0.588
SCE69252.1
Hypothetical protein.
       0.585
SCF02211.1
Endonuclease, Uma2 family (restriction endonuclease fold).
  
     0.575
SCE69262.1
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
       0.564
SCE77698.1
Diacylglycerol kinase catalytic domain-containing protein.
  
     0.526
SCE80159.1
Hypothetical protein.
  
     0.522
SCE80763.1
Hypothetical protein.
  
     0.521
SCF18932.1
Hypothetical protein.
  
     0.512
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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