Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCE78976.1Sortase A. (284 aa)    
Predicted Functional Partners:
SCE78985.1
Hypothetical protein.
 
   
 0.920
SCE78996.1
Anthranilate synthase, component II.
       0.877
SCE78965.1
Hypothetical protein.
       0.569
SCF39857.1
Transglutaminase-like superfamily protein.
 
     0.478
SCF14526.1
Hypothetical protein.
  
     0.459
SCF14509.1
Uncharacterized protein YoxC, contains an MCP-like domain.
  
     0.458
SCF21226.1
Protein of unknown function (DUF2993).
  
     0.434
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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